Newswise — All eyes were on southeast Florida’s St. Lucie Estuary in 2016 as it received national attention due to beach closures on the Fourth of July weekend from the massive amounts of toxic green slime that covered parts of the 7-mile-long inlet linked to a coastal river system. Microcystis aeruginosa – a freshwater blue-green alga that can produce toxins – wreaked havoc on this important ecosystem prompting researchers from Florida Atlantic University’s Harbor Branch Oceanographic Institute to get to the root of the problem. This bloom event followed a one-year watershed to reef study. Results of the study, which uncovered a major source of nutrients driving the harmful algal blooms, stink.

Contrary to the widespread misconception that periodic discharges from Lake Okeechobee alone produced these harmful algal blooms, FAU Harbor Branch’s study provides multiple lines of evidence that nutrient sources in the local basins, including on-site sewage and septic systems, contaminated the St. Lucie Estuary, in particular its urbanized sections as well as its watershed. Results of the study are published in the journal Harmful Algae.

“It has long been thought that the algal blooms found in Lake Okeechobee, which are caused by pollution such as runoffs from farms, were solely responsible for driving the blooms and their toxins in the St. Lucie Estuary,” said Brian E. Lapointe, Ph.D., lead author of the study and a research professor at FAU Harbor Branch, who recently presented these findings at the ninth U.S. National Harmful Algal Bloom Conference. “We wanted to investigate the role of on-site septic systems, which have previously been overlooked.”

Although algae are always present in natural bodies of water like oceans and rivers, a few types can produce toxins that can seriously harm people, animals, fish, and other parts of the ecosystem. These harmful algal blooms are stimulated by environmental factors like light, salinity and nutrient levels such as nitrogen and phosphorus. Nitrogen and phosphorus are found in high concentrations in human waste and wastewater.

To distinguish between water quality impacts from groundwater and stormwater runoff from the St. Lucie Estuary versus other impacts directly related to periodic discharges from Lake Okeechobee, Lapointe and his collaborators conducted a comprehensive analysis of the interactions of septic systems, groundwater, and surface waters. They analyzed groundwater sampling in two residential areas with aging septic systems identified as high priority septic-to-sewer conversion sites and searched for aqueous nitrogen isotopes, and sucralose, an artificial sweetener that cannot be broken down by the body or any treatment process for that matter.

They sampled surface water in the C-44 and C-23 canals and nearshore reefs looking for dissolved nutrients as well as sucralose and collected and analyzed macrophytes, phytoplankton and algal tissue. The fresh water inputs to the St. Lucie Estuary system, including rainfall and discharges through the C-44, C-23 and C-24 canals and bacterial counts at all four sites within the study area were followed throughout the study.

From the study samples, Lapointe and his collaborators clearly identified that wastewater contamination is a significant driver of water quality decline and ecological dysfunction in the St. Lucie Estuary and downstream nearshore reefs. Evidence from the samples they gathered and tested showed that human wastewater nitrogen from septic systems was a major contributor to the high nitrogen concentrations in the estuary and downstream coastal reefs, the latter representing the northernmost extent of coral growth in South Florida.

The combination of the freshwater conditions in the estuary, combined with wastewater nitrogen (ammonium) enrichment, resulted in a “perfect storm” bioreactor that supported growth and toxin production in Microcystis. These particular freshwater Microcystis blooms (and toxins) are increasing in estuaries and coastal waters around the world and are expected to expand in scale and intensity with global climate change. Some of the most chronic blooms are occurring in Lake Erie, Cape Fear River, Patos Lagoon Estuary in Brazil, and Lake Taihu in China.

For the study, Lapointe also utilized data from several Land Ocean Biogeochemical Observatory (LOBO) units installed in the St. Lucie Estuary. The LOBOs are a significant monitoring network in the Indian River Lagoon that provide users the capability to observe and predict water quality in real-time.

“In the St. Lucie Estuary study area, septic-to-sewer programs, which include nitrogen and phosphorus removal through advanced wastewater treatment, could help meet this challenge and mitigate future harmful algal blooms,” said Lapointe. “These improvements within the local watershed combined with increased storage and nutrient management north of Lake Okeechobee would collectively improve the conditions in both the St. Lucie Estuary, adjacent portions of the Indian River Lagoon, and the nearshore reefs downstream of the St. Lucie Inlet while better protecting human health.”

According to the United States Environmental Protection Agency, harmful algal blooms are a major environmental problem in all 50 states. Commonly known as red tides, brown tides and green tides, blue-green algae or cyanobacteria, like Microcystis, are considered harmful algal blooms and can have severe impacts on human health, aquatic ecosystems and the economy.

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About the St. Lucie Estuary:

The St. Lucie Estuary has an artificially large watershed comprised of a network of drainage canals, one of which (C-44) is used to lower the water level in Lake Okeechobee. The network of canals was constructed in the early 1900s to alleviate flooding and increase developmental potential. The massive fresh water releases from Lake Okeechobee and the C-44 watershed in the unusually wet years of 2005, 2013, and 2016 contributed to the lowered salinity in the estuary, which resulted in the upper estuary resembling a fresh water lake for an extended period in May, June, and July of 2016.  


About Harbor Branch Oceanographic Institute: Founded in 1971, Harbor Branch Oceanographic Institute at Florida Atlantic University is a research community of marine scientists, engineers, educators and other professionals focused on Ocean Science for a Better World. The institute drives innovation in ocean engineering, at-sea operations, drug discovery and biotechnology from the oceans, coastal ecology and conservation, marine mammal research and conservation, aquaculture, ocean observing systems and marine education. For more information, visit             


About Florida Atlantic University: Florida Atlantic University, established in 1961, officially opened its doors in 1964 as the fifth public university in Florida. Today, the University, with an annual economic impact of $6.3 billion, serves more than 30,000 undergraduate and graduate students at sites throughout its six-county service region in southeast Florida. FAU’s world-class teaching and research faculty serves students through 10 colleges: the Dorothy F. Schmidt College of Arts and Letters, the College of Business, the College for Design and Social Inquiry, the College of Education, the College of Engineering and Computer Science, the Graduate College, the Harriet L. Wilkes Honors College, the Charles E. Schmidt College of Medicine, the Christine E. Lynn College of Nursing and the Charles E. Schmidt College of Science. FAU is ranked as a High Research Activity institution by the Carnegie Foundation for the Advancement of Teaching. The University is placing special focus on the rapid development of critical areas that form the basis of its strategic plan: Healthy aging, biotech, coastal and marine issues, neuroscience, regenerative medicine, informatics, lifespan and the environment. These areas provide opportunities for faculty and students to build upon FAU’s existing strengths in research and scholarship. For more information, visit

Journal Link: Harmful Algae