DOE News
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    The DOE Science News Source is a Newswise initiative to promote research news from the Office of Science of the DOE to the public and news media.
    • 2017-06-22 13:05:15
    • Article ID: 676925

    A Single Electron's Tiny Leap Sets Off 'Molecular Sunscreen' Response

    A new X-ray laser technique will help scientists study a wide range of organic molecules that respond to light, from DNA building blocks to plastic products and receptors in your eyes.

    • Credit: Greg Stewart/SLAC National Accelerator Laboratory

      Thymine – the molecule illustrated in the foreground – is one of the four basic building blocks that make up the double helix of DNA. It’s such a strong absorber of ultraviolet light that the UV in sunlight should deactivate it, yet this does not happen. Researchers used an X-ray laser at SLAC National Accelerator Laboratory to observe the infinitesimal leap of a single electron that sets off a protective response in thymine molecules, allowing them to shake off UV damage.

    In experiments at the Department of Energy’s SLAC National Accelerator Laboratory, scientists were able to see the first step of a process that protects a DNA building block called thymine from sun damage: When it’s hit with ultraviolet light, a single electron jumps into a slightly higher orbit around the nucleus of a single oxygen atom.

    This infinitesimal leap sets off a response that stretches one of thymine’s chemical bonds and snaps it back into place, creating vibrations that harmlessly dissipate the energy of incoming ultraviolet light so it doesn’t cause mutations.

    The technique used to observe this tiny switch-flip at SLAC’s Linac Coherent Light Source (LCLS) X-ray free-electron laser can be applied to almost any organic molecule that responds to light – whether that light is a good thing, as in photosynthesis or human vision, or a bad thing, as in skin cancer, the scientists said. They described the study in Nature Communications today.

    “All of these light-sensitive organic molecules tend to absorb light in the ultraviolet. That’s not only why you get sunburn, but it’s also why your plastic eyeglass lenses offer some UV protection,” said Phil Bucksbaum, a professor at SLAC and Stanford University and director of the Stanford PULSE Institute at SLAC. “You can even see these effects in plastic lawn furniture – after a couple of seasons it can become brittle and discolored simply due to the fact that the plastic was absorbing ultraviolet light all the time, and the way it absorbs sun results in damage to its chemical bonds.”

    Catching Electrons in Action

    Thymine and the other three DNA building blocks also strongly absorb ultraviolet light, which can trigger mutations and skin cancer, yet these molecules seem to get by with minimal damage. In 2014, a team led by Markus Guehr – then a SLAC senior staff scientist and now on the faculty of the University of Potsdam in Germany – reported that they had found the answer: The stretch-snap of a single bond and resulting energy-dissipating vibrations, which took place within 200 femtoseconds, or millionths of a billionth of a second after UV light exposure.

    But what made the bond stretch? The team knew the answer had to involve electrons, which are responsible for forming, changing and breaking bonds between atoms. So they devised an ingenious way to catch the specific electron movements that trigger the protective response.

    It relied on the fact that electrons don’t orbit an atom’s nucleus in neat concentric circles, like planets orbiting a sun, but rather in fuzzy clouds that take a different shape depending on how far they are from the nucleus. Some of these orbitals are in fact like a fuzzy sphere; others look a little like barbells or the start of a balloon animal. You can see examples here.

    Strong Signal Could Solve Long-Standing Debate

    For this new experiment, the scientists hit thymine molecules with a pulse of UV laser light and tuned the energy of the LCLS X-ray laser pulses so they would home in on the response of the oxygen atom that’s at one end of the stretching, snapping bond.

    The energy from the UV light excited one of the atom’s electrons to jump into a higher orbital. This left the atom in a sort of tippy state where just a little more energy would boost a second electron into a higher orbital; and that second jump is what sets off the protective response, changing the shape of the molecule just enough to stretch the bond.

    The first jump, which was previously known to happen, is difficult to detect because the electron winds up in a rather diffuse orbital cloud, Guehr said. But the second, which had never been observed before, was much easier to spot because that electron ended up in an orbital with a distinctive shape that gave off a big signal.

    “Although this was a very tiny electron movement, the signal kind of jumped out at us in the experiment,” Guehr said. “I always had a feeling this would be a strong transition, just intuitively, but when we saw this come in it was a special moment, one of the best moments an experimentalist can have.”

    Settling a Longstanding Debate

    Study lead author Thomas Wolf, an associate staff scientist at SLAC, said the results should settle a longstanding debate about how long after UV exposure the protective response kicks in: It happens 60 femtoseconds after UV light hits. This time span is important, he said, because the longer the atom spends in the tippy state between the first jump and the second, the more likely it is to undergo some sort of reaction that could damage the molecule.

    Henrik Koch, a theorist at NTNU in Norway who was a guest professor at Stanford at the time, led the study with Guehr. He led the effort to model, understand and interpret what happened in the experiment, and he participated in it to an unusual extent, Guehr said.

    “He is extremely experienced in applying theory to methodology development, and he had this curiosity to bring this to our experiment,” Guehr said. “He was so fascinated by this research that he did something completely untypical of a theorist – he came to LCLS, into the control room, and he wanted to see the data coming in. I found that completely amazing and very motivating. It turned out that some of my previous thinking was completely right but other aspects were completely wrong, and Henrik did the right theory at the right level so we could learn from it.”

    LCLS is a DOE Office of Science User Facility. Other institutions involved in the study were Norwegian University of Science and Technology; University of Trieste and Elettra synchrotron in Trieste, Italy; Aarhus University in Denmark; University of Gothenburg and Uppsala University in Sweden; University of Connecticut; the DOE’s Argonne National Laboratory; Northwestern University; Ecole Polytechnique Federal de Lausanne in Switzerland; and the RIKEN Laser Technology Laboratory in Japan. The DOE Office of Science funded the research.


    SLAC is a multi-program laboratory exploring frontier questions in photon science, astrophysics, particle physics and accelerator research. Located in Menlo Park, Calif., SLAC is operated by Stanford University for the U.S. Department of Energy's Office of Science.

    SLAC National Accelerator Laboratory is supported by the Office of Science of the U.S. Department of Energy. The Office of Science is the single largest supporter of basic research in the physical sciences in the United States, and is working to address some of the most pressing challenges of our time. For more information, please visit science.energy.gov.

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    A Breakthrough in the Study of Laser/Plasma Interactions

    A Breakthrough in the Study of Laser/Plasma Interactions

    A new 3D particle-in-cell simulation tool developed by researchers from Lawrence Berkeley National Laboratory and CEA Saclay is enabling cutting-edge simulations of laser/plasma coupling mechanisms. More detailed understanding of these mechanisms is critical to the development of ultra-compact particle accelerators and light sources.

    Researchers Create the First Maps of Two Melatonin Receptors Essential for Sleep

    Researchers Create the First Maps of Two Melatonin Receptors Essential for Sleep

    An international team of researchers used an X-ray laser at the Department of Energy's SLAC National Accelerator Laboratory to create the first detailed maps of two melatonin receptors that tell our bodies when to go to sleep or wake up and guide other biological processes. A better understanding of how they work could enable researchers to design better drugs to combat sleep disorders, cancer and Type 2 diabetes. Their findings were published in two papers today in Nature.

    Capturing the behavior of single-atom catalysts on the move

    Capturing the behavior of single-atom catalysts on the move

    Scientists are excited by the prospect of stripping catalysts down to single atoms. Attached by the millions to a supporting surface, they could offer the ultimate in speed and specificity. Now researchers have taken an important step toward understanding single-atom catalysts by deliberately tweaking how they're attached to the surfaces that support them - in this case the surfaces of nanoparticles.

    Watching Molecules Split in Real Time

    Watching Molecules Split in Real Time

    Using a new X-ray technique, a team of researchers was able to watch in real time as a molecule split apart into two new molecules. The method could be used to look at chemical reactions that other techniques can't catch, for instance in catalysis, photovoltaics, peptide and combustion research. The team, led by researchers from Brown University in collaboration with the Department of Energy's SLAC National Accelerator Laboratory, published their results in March in Angewandte Chemie.

    Capturing Energy Flow in a Plasma by Measuring Scattered Light

    Capturing Energy Flow in a Plasma by Measuring Scattered Light

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    Artificial Intelligence and Deep Learning Accelerate Efforts to Develop Clean, Virtually Limitless Fusion Energy

    Artificial Intelligence and Deep Learning Accelerate Efforts to Develop Clean, Virtually Limitless Fusion Energy

    The Fusion Recurrent Neural Network reliably forecasts disruptive and destructive events in tokamaks.

    Spin Flipper Upends Protons

    Spin Flipper Upends Protons

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    Catalyst Renders Nerve Agents Harmless

    Catalyst Renders Nerve Agents Harmless

    A team of scientists including researchers at the U.S. Department of Energy's (DOE) Brookhaven National Laboratory has studied a catalyst that decomposes nerve agents, eliminating their harmful and lethal effects. The research was published Friday, April 19, in the Journal of Physical Chemistry Letters. "Our work is part of an ongoing, multiagency effort to protect soldiers and civilians from chemical warfare agents (CWAs)," said Anatoly Frenkel, a physicist with a joint appointment at Brookhaven Lab and Stony Brook University and the lead author on the paper.

    Splitting Water Fast! Catalyst Works Faster than Mother Nature

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    Sea Quark Spin Surprise!

    Sea Quark Spin Surprise!

    Antiquark spin contribution to proton spin depends on flavor, which could help unlock secrets about the nuclear structure of atoms that make up nearly all visible matter in our universe.


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    Five new innovators join Chain Reaction Innovations in third cohort

    Five new innovators join Chain Reaction Innovations in third cohort

    Five new innovators will be joining Chain Reaction Innovations (CRI), the entrepreneurship program at the U.S. Department of Energy's (DOE's) Argonne National Laboratory, as part of the elite program's third cohort. Announced on Monday, April 22, these innovators were selected following an extensive national solicitation process and two-part pitch competition, with reviews from industry experts, investors, scientists and engineers.

    Department of Energy Announces $20 Million for Artificial Intelligence Research

    Today, the U.S. Department of Energy (DOE) announced a total of $20 million in funding for innovative research and development in artificial intelligence (A.I.) and machine learning.

    Tim Knewitz named Argonne National Laboratory's Chief Financial Officer

    Tim Knewitz named Argonne National Laboratory's Chief Financial Officer

    The U.S. Department of Energy's Argonne National Laboratory has named Tim Knewitz at its Chief Financial Officer.

    Department of Energy Announces $95 Million for Small Business Research and Development Grants

    U.S. Energy Secretary Rick Perry today announced that the Department of Energy will award 86 grants totaling $95 million to 74 small businesses in 21 states.

    DOE's Science Graduate Student Research Program Selects 70 Students to Pursue Research at DOE Laboratories

    The Department of Energy's (DOE's) Office of Science has selected 70 graduate students from across the nation for its 2018 Solicitation 2 cycle for Office of Science Graduate Student Research (SCGSR) Program.

    Brookhaven Joins the IBM Q Network Hub at Oak Ridge National Lab

    Brookhaven Joins the IBM Q Network Hub at Oak Ridge National Lab

    Brookhaven National Lab has joined the IBM Q Network Hub at Oak Ridge National Lab. This hub is part of an international community of Fortune 500 companies, startups, universities, and research labs working with IBM to advance quantum computing and explore its practical applications.

    David Reis named head of PULSE Institute for ultrafast science

    David Reis named head of PULSE Institute for ultrafast science

    Long before David Reis joined the faculty of the Department of Energy's SLAC National Accelerator Laboratory and Stanford University, he was helping lay the groundwork for the lab's first-of-a-kind X-ray free-electron laser, or XFEL, and the revolutionary science that followed its opening in 2009. Now he's director of the PULSE Institute, which was founded by SLAC and Stanford with the express purpose of exploiting the possibilities for ultrafast science at that X-ray laser, the Linac Coherent Light Source (LCLS).

    Head of NSTX-U research is appointed deputy director for research at the Princeton Plasma Physics Laboratory

    Head of NSTX-U research is appointed deputy director for research at the Princeton Plasma Physics Laboratory

    Jon Menard, the head of research on the Princeton Plasma Physics Laboratory's National Spherical Torus Experiment-Upgrade, has been named deputy director for research. Michael Zarnstorff, who held the position for 10 years, will become the chief chief scientist at PPPL, a position that will oversee strategic scientific planning.

    Argonne scientist advances energy sciences through professional leadership

    Argonne scientist advances energy sciences through professional leadership

    Ralph Muehleisen of the U.S. Department of Energy's (DOE) Argonne National Laboratory was recently re-elected to the Board of Directors of IBPSA-USA, the U.S. affiliate of the International Building Performance Simulation Association. IBPSA is a global leader in the promotion of building simulation science and one of the largest professional organizations in the world for building scientists and engineers.

    Brookhaven Lab Publishes Second Edition of Nuclear Nonproliferation Textbook

    Brookhaven Lab Publishes Second Edition of Nuclear Nonproliferation Textbook

    Brookhaven Lab has published the second edition of Deterring Nuclear Proliferation: The Importance of IAEA Safeguards, a textbook that provides a history of the origins of the International Atomic Energy Agency (IAEA) and introduces the ways in which IAEA verifies nation states' nuclear nonproliferation commitments.


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    Capturing Energy Flow in a Plasma by Measuring Scattered Light

    Capturing Energy Flow in a Plasma by Measuring Scattered Light

    First measurements of heat flux in plasmas experientially sheds light on models relying on classical thermal transport.

    Artificial Intelligence and Deep Learning Accelerate Efforts to Develop Clean, Virtually Limitless Fusion Energy

    Artificial Intelligence and Deep Learning Accelerate Efforts to Develop Clean, Virtually Limitless Fusion Energy

    The Fusion Recurrent Neural Network reliably forecasts disruptive and destructive events in tokamaks.

    Spin Flipper Upends Protons

    Spin Flipper Upends Protons

    The spin direction of protons was reversed, for the first time, using a nine-magnet device, potentially helping tease out details about protons that affect medical imaging and more.

    Splitting Water Fast! Catalyst Works Faster than Mother Nature

    Splitting Water Fast! Catalyst Works Faster than Mother Nature

    Design principles lead to a catalyst that splits water in a low pH environment, vital for generating solar fuels.

    Sea Quark Spin Surprise!

    Sea Quark Spin Surprise!

    Antiquark spin contribution to proton spin depends on flavor, which could help unlock secrets about the nuclear structure of atoms that make up nearly all visible matter in our universe.

    The Weak Side of the Proton

    The Weak Side of the Proton

    A precision measurement of the proton's weak charge narrows the search for new physics.

    Fast-Moving Pairs May Solve 35-Year-Old Mystery

    Fast-Moving Pairs May Solve 35-Year-Old Mystery

    Physicists develop a universal mathematical description that suggests that proton-neutron pairs in a nucleus may explain why their associated quarks have lower average momenta than predicted.

    Team Takes Fluoride from Taps and Toothpaste to Batteries

    Team Takes Fluoride from Taps and Toothpaste to Batteries

    With user facilities, researchers devise novel battery chemistries to help make fluoride batteries a reality.

    Quarks Under Pressure in the Proton

    Quarks Under Pressure in the Proton

    Pressure in the middle of a proton is about 10 times higher than in a neutron star.

    Magnetic Levitation of Ultracold Neutrons Yields New Measurement of the Neutron Lifetime

    Magnetic Levitation of Ultracold Neutrons Yields New Measurement of the Neutron Lifetime

    Storing extremely slow neutrons in a novel trap enables precise measurement of a basic property of particle physics.


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