DOE News
    Doe Science news source
    The DOE Science News Source is a Newswise initiative to promote research news from the Office of Science of the DOE to the public and news media.
    • 2017-09-26 12:00:47
    • Article ID: 681802

    2018 DOE JGI Community Science Program Allocations Announced

    Proposals encompass multiple capabilities of the national user facility

    • Credit: S. Torres-Martínez. University of Murcia, Spain

      Image of Mucor circinelloides sporangiophore. Fungal responses to DNA methylation in the context of developmental signals is just one aspect of Victoriano Garre‘s 2018 JGI Community Science Program proposal.

    Though organisms can be studied in isolation, a more comprehensive picture emerges when their environmental interactions are taken into account. Along the same lines, many of the 30 proposals selected for the 2018 Community Science Program (CSP) of the U.S. Department of Energy Joint Genome Institute (DOE JGI), a DOE Office of Science User Facility, aim to utilize multiple genomic and analytical capabilities, along with scientific expertise, to users focused on the underlying mechanisms involved in bioenergy generation and biogeochemical processes.

    “These new CSP projects demonstrate further growth into multi-omics, with nearly all requesting functional genomics technologies including transcriptomics, epigenomics and metabolomics, and roughly half spanning more than one of our Science Programs,” said Susannah Tringe, DOE JGI User Programs Deputy. “They bring exciting new investigators, ideas and approaches to the application of genomics to DOE mission science.”

    The CSP 2018 proposals were selected from 76 full submissions based on 94 letters of intent. Click here to see the full list of approved CSP 2018 proposals. Additionally, 60 percent of the accepted proposals come from new DOE JGI primary investigators.

    Among this year’s accepted proposals:

    • Dan Buckley of Cornell University aims to dissect soil microbial food webs using stable isotope probing, a method that traces nutrient fluxes by providing labeled substrates that are consumed and incorporated into DNA. This will allow his group to identify and characterize uncultivated microbes that have crucial roles in the soil carbon cycle.
    • Boulos Chalhoub of the French National Institute for Agricultural Research (INRA) will explore how DNA methylation and repeated hybridization have shaped the polyploid Brachypodium hybridum, a relative of candidate bioenergy grasses such as switchgrass. Polyploid plants contain multiple sets of chromosomes, which makes sequencing and assembling these genomes more challenging, but can also make the plants more stress tolerant.
    • Maureen Coleman of the University of Chicago will apply integrated ecosystem genomics across the Great Lakes, which hold 20 percent of the Earth’s surface freshwater. She will characterize the metabolic diversity and activity of microbes participating in nutrient cycling in these important aquatic systems.
    • Byron Crump of Oregon State University aims to apply metagenomics and metatranscriptomics to microbes that metabolize dissolved organic matter in river ecosystems, critical conduits for land-to-ocean transfer of materials including terrestrial organic matter.
    • Alisa Huffaker of the University of California (UC), San Diego will harness the DOE JGI’s diverse capabilities in the plant, metagenome, and synthesis programs, and use metabolomics to produce systems analysis of the metabolic diversity of sorghum and maize to better understand microbiome interactions and how these grasses tolerate various stresses.
    • James Leebens-Mack of the University of Georgia will develop a comparative plant genomics framework involving high-quality genome assemblies and annotations for 35 species. The Open Green Genomes Initiative, which lists 98 co-primary investigators along with Leebens-Mack, will improve comparative analyses of the genes, regulatory networks and metabolic pathways influencing plant growth and responses to environmental stress, and inform engineering of plants for efficient production of biofuels and bioproducts. In the proposal, the team noted that the large number of investigators “is a testament to the importance and broad interest in developing infrastructure – including strategically sampled reference-quality genome sequences – to aid comprehensive comparative analyses across the green tree of life.”
    • Udaya Kalluri of Oak Ridge National Laboratory wants to know how modifying plant cell walls in the candidate bioenergy feedstock crop poplar, one of the DOE JGI’s Plant Flagship Genomes, impacts plant-microbe interactions and the utility of poplar for biofuel production.
    • Corby Kistler of the USDA-ARS Cereal Disease Lab and the University of Minnesota targets the mutually antagonistic relationships between bacteria and fungi in native prairie soil, and how their system of checks and balances allow perennials to thrive. His proposal will harness the DOE JGI’s fungal, microbial, metagenome and metabolomics capabilities.
    • Yu Liu of the University of Texas Southwestern Medical Center plans to define the global regulatory network of DNA chromatin structures in the filamentous fungus Neurospora crassa, an important model organism for the fungal conversion of biomass.
    • Norma Martinez-Gomez of Michigan State University aims to identify the rare earth element-dependent enzymes involved in plant-microbe interactions that can boost crop yields such as candidate bioenergy feedstocks while reducing the need for fertilizers.
    • Jennifer Martiny of UC Irvine will explore the activity of surface soil microbes on leaf litter in an arid ecosystem to understand how daily cycles in moisture and temperature impact nutrient cycling.
    • Neslihan Tas of Lawrence Berkeley National Laboratory, recently named a DOE Early Career Research Program awardee, plans to use sequencing and metabolomics to explore microbial functions over time in watershed ecosystems. Her team is already collecting samples from soil-aquatic interfaces at two Colorado high-elevation streams.
    • Ru Zhang of the Donald Danforth Plant Science Center is investigating how the model green alga Chlamydomonas reinhardtiigenome sequenced and assembled by the DOE JGI – regulates its responses to heat stress and day length with the aid of metabolomics. The information could lead to algal strains that produce more biomass for conversion to biofuel. 

    These projects, as well as the other 17 selected in this round of the CSP, represent new ways of incorporating DNA sequencing with other analytic approaches to explore biological relationships that underpin bioenergy and biogeochemical processes. Understanding how microbes live in association with other microbes and plants, how plant genome diversity results from DNA modifications, how microbes exploit available local nutrient resources, and how metabolic plasticity can be understood and potentially exploited, among other questions, will help scientists leverage high throughput analytic methods for DOE mission purposes.

     

    The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation and environmental characterization and cleanup. DOE JGI, headquartered in Walnut Creek, Calif., provides integrated high-throughput sequencing and computational analysis that enable systems-based scientific approaches to these challenges. Follow @doe_jgi on Twitter.

    DOE’s Office of Science is the largest supporter of basic research in the physical sciences in the United States, and is working to address some of the most pressing challenges of our time. For more information, please visit science.energy.gov.

    X
    X
    X
    • Filters

    • × Clear Filters

    Researchers switch material from one state to another with a single flash of light

    Scientists from the Department of Energy's SLAC National Accelerator Laboratory and the Massachusetts Institute of Technology have demonstrated a surprisingly simple way of flipping a material from one state into another, and then back again, with single flashes of laser light.

    The Stories Behind the Science: How Does the Ocean's Saltiness Affect Tropical Storms?

    Two researchers with personal experience of hurricanes set out to investigate the role of an underestimated factor in storm's strength - salinity. They found that salinity plays a larger role than anyone thought, including them.

    Surprise finding: Discovering a previously unknown role for a source of magnetic fields

    Feature describes unexpected discovery of a role the process that seeds magnetic fields plays in mediating a phenomenon that occurs throughout the universe and can disrupt cell phone service and knock out power grids on Earth.

    Genetic behavior reveals cause of death in poplars essential to ecosystems, industry

    Scientists studying a valuable, but vulnerable, species of poplar have identified the genetic mechanism responsible for the species' inability to resist a pervasive and deadly disease. Their finding could lead to more successful hybrid poplar varieties for increased biofuels and forestry production and protect native trees against infection.

    Pushing the (Extra Cold) Frontiers of Superconducting Science

    Ames Laboratory has developed a method to measure magnetic properties of superconducting and magnetic materials that exhibit unusual quantum behavior at very low temperatures in high magnetic fields.

    Scientists Find Unusual Behavior in Topological Material

    Argonne scientists have identified a new class of topological materials made by inserting transition metal atoms into the atomic lattice of a well-known two-dimensional material.

    Wind Farms and Reducing Hurricane Precipitation

    New research reveals an unexpected benefit of large-scale offshore wind farms: the ability to lessen precipitation from hurricanes.

    New simulations confirm efficiency of waste-removal process in plasma device

    PPPL scientists have found evidence suggesting that a process could remove the unwanted ash produced during fusion reactions and make the fusion processes more efficient within a type of fusion facility known as a field-reversed configuration device.

    How Animals Use Their Tails to Swish and Swat Away Insects

    A new study shows how animals use their tails to keep mosquitoes at bay by combining a swish that blows away most of the biting bugs and a swat that kills the ones that get through.

    Missing gamma-ray blobs shed new light on dark matter, cosmic magnetism

    Scientists, including researchers from the Department of Energy's SLAC National Accelerator Laboratory, have compiled the most detailed catalog of such blobs using eight years of data collected with the Large Area Telescope (LAT) on NASA's Fermi Gamma-Ray Space Telescope. The blobs, including 19 gamma-ray sources that weren't known to be extended before, provide crucial information on how stars are born, how they die, and how galaxies spew out matter trillions of miles into space.


    • Filters

    • × Clear Filters

    Engineering professor receives Department of Energy grant

    New Mexico State University Department of Civil Engineering Assistant Professor Ehsan Dehghan Niri has received a United States Department of Energy grant. This is a three-year award for $400,000 and is a collaboration with Arizona State University.

    AVS and AIP Publishing Expand Partnership to Launch AVS Quantum Science

    AIP Publishing and AVS: Science and Technology of Materials, Interfaces, and Processing (AVS) today announced an agreement to publish AVS Quantum Science, a new online interdisciplinary journal. The announcement coincides with the AVS 65th International Symposium & Exhibition in Long Beach, California, from October 21-26, 2018.

    Prototype Solar Energy, Battery Systems to Fuel Commercialization

    Designing, building and testing prototype systems that show how renewable energy can power devices, such as a weather and soil sensor station, can help bridge the gap between basic science research and commercialization.

    Argonne to Advance High Performance Computing in Manufacturing

    Argonne awarded funding to partner with Industry to advance the use of high performance computing in manufacturing.

    "Invisible Glass" Wins 2018 Create the Future Design Contest Grand Prize

    Scientists from the Center for Functional Nanomaterials developed a technique for making nonreflecting glass, silicon, and plastic surfaces.

    Missouri S&T researchers win multimillion dollar grant to build fast-charging stations for electric cars

    Researchers from Missouri S&T and three private companies will combine their expertise to create charging stations for electric vehicles that could charge a car in less than 10 minutes - matching the time it takes to fill up a conventional vehicle with gasoline."The big problem with electric vehicles is range, and it's not so much range as range anxiety.

    Making batteries store more energy, last longer

    A new solid polymer electrolyte may help make cell phone batteries store more energy and last longer.

    Three Brookhaven Lab Scientists Named Fellows of American Physical Society

    The American Physical Society (APS), the world's largest physics organization, has elected three scientists from the U.S. Department of Energy's (DOE) Brookhaven National Laboratory as 2018 APS fellows.

    Southern Research first to win accreditation under ISO 14034

    Southern Research has become the first organization in the United States to earn accreditation under ISO 14034, a new international standard for evaluating and verifying environmental technologies that was recently adopted by the American National Standards Institute.

    Kawtar Hafidi to head Physical Sciences and Engineering directorate at Argonne

    Physicist Kawtar Hafidi has been appointed Associate Laboratory Director, Physical Sciences and Engineering at the U.S. Department of Energy's (DOE) Argonne National Laboratory.


    • Filters

    • × Clear Filters

    Cryocooler Cools an Accelerator Cavity

    Researchers demonstrated cryogen-free operation of a superconducting radio-frequency cavity that might ease barriers to its use in societal applications.

    Shining Light on the Separation of Rare Earth Metals

    New studies identify key molecular characteristics to potentially separate rare earth metals cleanly and efficiently with light.

    Placing Atoms for Optimum Catalysts

    Precise positioning of oxygens could help engineer faster, more efficient energy-relevant chemical transformations.

    How to Make Soot and Stardust

    Scientists unlock mystery that could help reduce emissions of fine particles from combustion engines and other sources.

    Breaking the Symmetry Between Fundamental Forces

    Scientists improve our understanding of the relationship between fundamental forces by re-creating the earliest moments of the universe.

    Water Plays Unexpected Role in Forming Minerals

    Water molecules line up tiny particles to attach and form minerals; understanding how this happens impacts energy extraction and storage along with waste disposal.

    Heavy Particles Get Caught Up in the Flow

    First direct measurement show how heavy particles containing a charm quark get caught up in the flow of early universe particle soup.

    Seeing Between the Atoms

    New detector enables electron microscope imaging at record-breaking resolution.

    Scaling Up Single-Crystal Graphene

    New method can make films of atomically thin carbon that are over a foot long.

    Discovered: Optimal Magnetic Fields Suppress Instabilities in Tokamak Plasmas

    U.S. and Korean scientists show how to find and use beneficial 3-D field perturbations to stabilize dangerous edge-localized modes in plasma.


    Spotlight

    Thursday October 11, 2018, 04:00 PM

    Research on Light-Matter Interaction Could Lead to Improved Electronic and Optoelectronic Devices

    Rensselaer Polytechnic Institute (RPI)

    Wednesday October 03, 2018, 07:05 PM

    Innovating Our Energy Future

    Oregon State University, College of Engineering

    Tuesday October 02, 2018, 03:05 PM

    Physics graduate student takes her thesis research to a Department of Energy national lab

    University of Alabama at Birmingham

    Friday September 21, 2018, 01:05 PM

    "Model" students enjoy Argonne campus life

    Argonne National Laboratory

    Thursday September 06, 2018, 01:05 PM

    Writing Code for a More Skilled and Diverse STEM Workforce

    Brookhaven National Laboratory

    Tuesday September 04, 2018, 11:30 AM

    New graduate student summer school launches at Princeton Plasma Physics Laboratory

    Princeton Plasma Physics Laboratory

    Friday August 31, 2018, 06:05 PM

    The Gridlock State

    California State University (CSU) Chancellor's Office

    Friday August 31, 2018, 02:05 PM

    Meet Jasmine Hatcher and Trishelle Copeland-Johnson

    Brookhaven National Laboratory

    Friday August 24, 2018, 11:05 AM

    Argonne hosts Modeling, Experimentation and Validation Summer School

    Argonne National Laboratory

    Wednesday August 22, 2018, 01:05 PM

    Students affected by Hurricane Maria bring their research to SLAC

    SLAC National Accelerator Laboratory

    Wednesday August 22, 2018, 10:05 AM

    Brookhaven Lab Pays Tribute to 2018 Summer Interns

    Brookhaven National Laboratory

    Monday August 20, 2018, 12:05 PM

    Changing How Buildings Are Made

    Washington University in St. Louis

    Thursday August 16, 2018, 12:05 PM

    CSUMB Selected to Host Architecture at Zero Competition in 2019

    California State University, Monterey Bay

    Friday July 20, 2018, 03:00 PM

    Department of Energy Invests $64 Million in Advanced Nuclear Technology

    Rensselaer Polytechnic Institute (RPI)

    Thursday July 19, 2018, 05:00 PM

    Professor Miao Yu Named the Priti and Mukesh Chatter '82 Career Development Professor

    Rensselaer Polytechnic Institute (RPI)

    Tuesday July 03, 2018, 11:05 AM

    2018 RHIC & AGS Annual Users' Meeting: 'Illuminating the QCD Landscape'

    Brookhaven National Laboratory

    Friday June 29, 2018, 06:05 PM

    Argonne welcomes The Martian author Andy Weir

    Argonne National Laboratory

    Monday June 18, 2018, 09:55 AM

    Creating STEM Knowledge and Innovations to Solve Global Issues Like Water, Food, and Energy

    Illinois Mathematics and Science Academy (IMSA)

    Friday June 15, 2018, 10:00 AM

    Professor Emily Liu Receives $1.8 Million DoE Award for Solar Power Systems Research

    Rensselaer Polytechnic Institute (RPI)

    Thursday June 07, 2018, 03:05 PM

    Celebrating 40 years of empowerment in science

    Argonne National Laboratory

    Monday May 07, 2018, 10:30 AM

    Introducing Graduate Students Across the Globe to Photon Science

    Brookhaven National Laboratory

    Wednesday May 02, 2018, 04:05 PM

    Students from Massachusetts and Washington Win DOE's 28th National Science Bowl(r)

    Department of Energy, Office of Science

    Thursday April 12, 2018, 07:05 PM

    The Race for Young Scientific Minds

    Argonne National Laboratory

    Wednesday March 14, 2018, 02:05 PM

    Q&A: Al Ashley Reflects on His Efforts to Diversify SLAC and Beyond

    SLAC National Accelerator Laboratory

    Thursday February 15, 2018, 12:05 PM

    Insights on Innovation in Energy, Humanitarian Aid Highlight UVA Darden's Net Impact Week

    University of Virginia Darden School of Business

    Friday February 09, 2018, 11:05 AM

    Ivy League Graduate, Writer and Activist with Dyslexia Visits CSUCI to Reframe the Concept of Learning Disabilities

    California State University, Channel Islands

    Wednesday January 17, 2018, 12:05 PM

    Photographer Adam Nadel Selected as Fermilab's New Artist-in-Residence for 2018

    Fermi National Accelerator Laboratory (Fermilab)

    Wednesday January 17, 2018, 12:05 PM

    Fermilab Computing Partners with Argonne, Local Schools for Hour of Code

    Fermi National Accelerator Laboratory (Fermilab)

    Wednesday December 20, 2017, 01:05 PM

    Q&A: Sam Webb Teaches X-Ray Science from a Remote Classroom

    SLAC National Accelerator Laboratory

    Monday December 18, 2017, 01:05 PM

    The Future of Today's Electric Power Systems

    Rensselaer Polytechnic Institute (RPI)

    Monday December 18, 2017, 12:05 PM

    Supporting the Development of Offshore Wind Power Plants

    Rensselaer Polytechnic Institute (RPI)

    Tuesday October 03, 2017, 01:05 PM

    Stairway to Science

    Argonne National Laboratory

    Thursday September 28, 2017, 12:05 PM

    After-School Energy Rush

    Argonne National Laboratory

    Thursday September 28, 2017, 10:05 AM

    Bringing Diversity Into Computational Science Through Student Outreach

    Brookhaven National Laboratory

    Thursday September 21, 2017, 03:05 PM

    From Science to Finance: SLAC Summer Interns Forge New Paths in STEM

    SLAC National Accelerator Laboratory

    Thursday September 07, 2017, 02:05 PM

    Students Discuss 'Cosmic Opportunities' at 45th Annual SLAC Summer Institute

    SLAC National Accelerator Laboratory

    Thursday August 31, 2017, 05:05 PM

    Binghamton University Opens $70 Million Smart Energy Building

    Binghamton University, State University of New York

    Wednesday August 23, 2017, 05:05 PM

    Widening Horizons for High Schoolers with Code

    Argonne National Laboratory

    Saturday May 20, 2017, 12:05 PM

    Rensselaer Polytechnic Institute Graduates Urged to Embrace Change at 211th Commencement

    Rensselaer Polytechnic Institute (RPI)

    Monday May 15, 2017, 01:05 PM

    ORNL, University of Tennessee Launch New Doctoral Program in Data Science

    Oak Ridge National Laboratory

    Friday April 07, 2017, 11:05 AM

    Champions in Science: Profile of Jonathan Kirzner

    Department of Energy, Office of Science

    Wednesday April 05, 2017, 12:05 PM

    High-Schooler Solves College-Level Security Puzzle From Argonne, Sparks Interest in Career

    Argonne National Laboratory

    Tuesday March 28, 2017, 12:05 PM

    Champions in Science: Profile of Jenica Jacobi

    Department of Energy, Office of Science

    Friday March 24, 2017, 10:40 AM

    Great Neck South High School Wins Regional Science Bowl at Brookhaven Lab

    Brookhaven National Laboratory

    Wednesday February 15, 2017, 04:05 PM

    Middle Schoolers Test Their Knowledge at Science Bowl Competition

    Argonne National Laboratory





    Showing results

    0-4 Of 2215