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    The DOE Science News Source is a Newswise initiative to promote research news from the Office of Science of the DOE to the public and news media.
    • 2018-03-07 14:05:54
    • Article ID: 690742

    With Laser Light, Scientists Create First X-Ray Holographic Images of Viruses

    Using SLAC's X-ray laser, researchers have made the detailed 3-D images of nanoscale biology, with future applications in the study of air pollution, combustion and catalytic processes.

    • Credit: Anatoli Ulmer and Taisia Gorkhover / The Technical University of Berlin and SLAC National Accelerator Laboratory

      This image shows simulated X-ray diffraction patterns that form an in-flight hologram. The depth information is captured from the curved lines.

    • Credit: Anatoli Ulmer and Taisia Gorkhover / The Technical University of Berlin and SLAC National Accelerator Laboratory

      In the new study, the authors superimposed scattered X-ray light from the mimivirus with scattered X-ray light from a reference sphere (main image). The curvature in the superimposed images from the two objects provided depth information and details about the shape of the virus. The image in the lower right corner is a holographic reconstruction of the virus based on the X-ray diffraction patterns collected during the experiment.

    • Credit: Anatoli Ulmer and Taisia Gorkhover / The Technical University of Berlin and SLAC National Accelerator Laboratory

      Illustration showing the principle of in-flight holography. (Left) The X-rays scatter off two spheres and form a characteristic diffraction pattern. The patterns are recorded using the very intense X-ray beam of SLAC’s X-ray laser, the Linac Coherent Light Source (LCLS). (Center) Changes in size and distance of the spheres are reflected in the patterns which can be directly translated from the diffraction alone. The smaller sphere can act as a holographic reference. (Right) If the spheres are shifted out of plane, the fine lines of the diffraction pattern become curved. The signatures of the position and size of the reference allow researchers to reconstruct the 3-D distances between the small sphere (reference) and the large sphere.

    Holography, like photography, is a way to record the world around us. Both use light to make recordings, but instead of two-dimensional photos, holograms reproduce three-dimensional shapes. The shape is inferred from the patterns that form after light ricochets off an object and interferes with another light wave that serves as a reference.

    When created with X-ray light, holography can be an extremely useful method for capturing high-resolution images of a nanoscale object—something that is so small, its size is measured in nanometers, or billionths of a meter.

    So far, X-ray holography has been restricted to objects that form crystals or relied on careful positioning of the sample on a surface. However, many nano-sized particles are non-crystalline, short-lived and very fragile. They may also suffer changes or damage during an experiment when positioned on a surface. Aerosols, exotic states of matter, and the smallest forms of life often fall into these categories and therefore are difficult to study with conventional imaging methods.

    In a recent study featured on the March 2018 cover of Nature Photonics, researchers developed a new holographic method called in-flight holography. With this method, they were able to demonstrate the first X-ray holograms of nano-sized viruses that were not attached to any surface.

    The patterns needed to create the images were taken at the Linac Coherent Light Source (LCLS), the X-ray free-electron laser at the Department of Energy’s SLAC National Accelerator Laboratory. Nanoviruses have been studied at LCLS without a holographic reference, but the interpretation of the X-ray images required many steps, relied on human input and was a computationally challenging task.

    In the new study, the authors superimposed scattered X-ray light from the virus with scattered X-ray light from a reference nano-sized sphere. The curvature in the superimposed images from the two objects provided depth information and details about the shape of the 450-nanometer-wide virus, the mimivirus. This technique greatly simplified the interpretation of the data.

    “Instead of thousands of steps and algorithms that potentially don’t match up, you have a two-step procedure where you clearly get the structure out of your image,” says lead study author Tais Gorkhover, a Panofsky Fellowat SLAC and researcher at the Stanford PULSE Institute.

    Now, the scientists can do their reconstruction of a sample in fractions of a second or even faster with the holographic method.

    “Before our study, the interpretation of the X-ray images was very complicated and the structure of nanosamples was reconstructed long after the actual experiment using non-trivial algorithms,” says Christoph Bostedt, a scientist at the DOE’s Argonne National Laboratory and a co-author of the study. “With ‘in-flight’ holography, the procedure is very simple and in principle can be performed while taking data. This is a real breakthrough.”

    “Another advantage of the in-flight holography method is that it is less prone to noise and to the artifacts that can appear in the detector compared to non-holographic X-ray imaging,” says Anatoli Ulmer, a co-author and PhD student from the Technical University of Berlin in Germany.

    In the long run, the researchers predict that in-flight holography will offer new ways to study air pollution, combustion and catalytic processes, all of which involve nanoparticles.

    An international team of scientists from the DOE’s Lawrence Berkeley and Brookhaven national laboratories, the Chalmers University of Technology in Sweden, the Czech Academy of Science, Deutsches Elektronen-Synchrotron (DESY) in Germany, the Institute of Optics and Atomic Physics in Germany, the Institute for Solid State Physics and Optics in Hungary, KTH Royal Institute of Technology in Sweden, Northwestern University and Uppsala University in Sweden also contributed to this research.

    LCLS is a DOE Office of Science user facility.

    SLAC is a multi-program laboratory exploring frontier questions in photon science, astrophysics, particle physics and accelerator research. Located in Menlo Park, Calif., SLAC is operated by Stanford University for the U.S. Department of Energy's Office of Science. For more informatiom, please visit slac.stanford.edu.

    SLAC National Accelerator Laboratory is supported by the Office of Science of the U.S. Department of Energy. The Office of Science is the single largest supporter of basic research in the physical sciences in the United States, and is working to address some of the most pressing challenges of our time. For more information, please visit science.energy.gov.

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    Hidden Giants in Forest Soils

    Viruses can infect the microbes residing in, on and around soils, impacting their ability to regulate these global cycles. In Nature Communications, giant virus genomes have been discovered for the first time in a forest soil ecosystem by researchers from the DOE Joint Genome Institute and the University of Massachusetts-Amherst.

    Scientists Produce 3-D Chemical Maps of Single Bacteria

    Scientists at the National Synchrotron Light Source II (NSLS-II)--a U.S. Department of Energy (DOE) Office of Science User Facility at DOE's Brookhaven National Laboratory--have used ultrabright x-rays to image single bacteria with higher spatial resolution than ever before. Their work, published in Scientific Reports, demonstrates an x-ray imaging technique, called x-ray fluorescence microscopy (XRF), as an effective approach to produce 3-D images of small biological samples.

    Making X-ray Microscopy 10 Times Faster

    Microscopes make the invisible visible. And compared to conventional light microscopes, transmission x-ray microscopes (TXM) can see into samples with much higher resolution, revealing extraordinary details. Researchers across a wide range of scientific fields use TXM to see the structural and chemical makeup of their samples--everything from biological cells to energy storage materials.

    Microbes Eat the Same in Labs and the Desert

    Analyses of natural communities forming soil crusts agree with laboratory studies of isolated microbe-metabolite relationships.

    Self-Sensing Materials Are Here

    Oak Ridge National Laboratory researchers invented a way to make a nanomaterial-embedded composite that is stronger than other fiber-reinforced composites and imbued with a new capability--the ability to monitor its own structural health.

    Diverse Biofeedstocks Have High Ethanol Yields and Offer Biorefineries Flexibility

    Evidence suggests that biorefineries can accept various feedstocks without negatively impacting the amount of ethanol produced per acre.

    Opening Access to Explore the Synthetic Chemistry of Neptunium

    New, easily prepared starting material opens access to learning more about a difficult-to-control element in nuclear waste.

    Symbiosis a Driver of Truffle Diversity

    Truffles are thought of as dining delicacies but they play an important role in soil ecosystem services as the fruiting bodies of the ectomycorrhizal (ECM) fungal symbionts residing on host plant roots. An international team sought insights into the ECM lifestyle of truffle-forming species through a comparative analysis of eight fungal genomes.

    Climate Simulations Project Wetter, Windier Hurricanes

    New supercomputer simulations by climate scientists at the Department of Energy's Lawrence Berkeley National Laboratory (Berkeley Lab) have shown that climate change intensified the amount of rainfall in recent hurricanes such as Katrina, Irma, and Maria by 5 to 10 percent. They further found that if those hurricanes were to occur in a future world that is warmer than present, those storms would have even more rainfall and stronger winds.

    Tiny Titanium Barrier Halts Big Problem in Fuel-Producing Solar Cells

    New design coats molecular components and dramatically improves stability under tough, oxidizing conditions.


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    Jefferson Lab Shares 2018 R&D 100 Award for Cancer Treatment Monitoring System

    The OARtrac(r) system, built by RadiaDyne and including technologies developed by scientists at the U.S. Department of Energy's Thomas Jefferson National Accelerator Facility, has been awarded a 2018 R&D 100 Award by R&D Magazine.

    Four Argonne Technologies Receive 2018 R&D 100 Awards

    Four Argonne research projects have earned R&D 100 Awards, long considered the "Oscars" of scientific innovation.

    Argonne's Min Si receives early career award from IEEE Computer Society

    Argonne's Min Si wins Award for Excellence for Early Career Researchers in High Performance Computing through the Institute of Electrical and Electronics Engineers.

    Jefferson Lab Director Appointed to Distinguished Professorship

    Stuart Henderson, director of the Department of Energy's Thomas Jefferson National Accelerator Facility, has been appointed the Governor's Distinguished CEBAF professor at Old Dominion University. The position is supported by the Commonwealth of Virginia and is named for the Continuous Electron Beam Accelerator Facility, which is the main research facility located at Jefferson Lab.

    DOE issues call for HPC for Energy Innovation proposals

    The U.S. Department of Energy's (DOE) High Performance Computing for Energy Innovation (HPC4EI) Initiative today issued its first joint solicitation for the High Performance Computing for Manufacturing Program (HPC4Mfg) and the High Performance Computing for Materials Program (HPC4Mtls).

    DOE funding advances project to turn captured CO2 into key chemicals

    The U.S. Department of Energy has selected Southern Research for an award of up to $1.5 million to advance technology for carbon dioxide utilization.

    Sierra Reaches Higher Altitudes, Takes Number Two Spot on List of Fastest Supercomputers

    Sierra, Lawrence Livermore National Laboratory's newest supercomputer, rose to second place on the list of the world's fastest computing systems, TOP500 List representatives announced Monday at the International Conference for High Performance Computing, Networking, Storage and Analysis conference (SC18) in Dallas.

    Green energy: Wind energy agreement will provide savings, 50 percent of electricity needs for Kansas State University Manhattan campus

    Kansas State University has signed an agreement with Westar Energy to provide approximately 50 percent of the energy needs for the university's main Manhattan campus from a wind farm in Nemaha County and save the university nearly $200,000 annually.

    INCITE grants awarded to 62 computational research projects

    The U.S. Department of Energy announced new projects for 2019 through its Innovative and Novel Computational Impact on Theory and Experiment (INCITE) program.

    Argonne's Raj Kettimuthu Named ACM Distinguished Member

    Argonne computer scientist Raj Kettimuthu recently was named a Distinguished Member of the Association for Computing Machinery for his development of tools to analyze and enhance end-to-end data transfer performance.


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    Microbes Eat the Same in Labs and the Desert

    Analyses of natural communities forming soil crusts agree with laboratory studies of isolated microbe-metabolite relationships.

    Diverse Biofeedstocks Have High Ethanol Yields and Offer Biorefineries Flexibility

    Evidence suggests that biorefineries can accept various feedstocks without negatively impacting the amount of ethanol produced per acre.

    Opening Access to Explore the Synthetic Chemistry of Neptunium

    New, easily prepared starting material opens access to learning more about a difficult-to-control element in nuclear waste.

    Tiny Titanium Barrier Halts Big Problem in Fuel-Producing Solar Cells

    New design coats molecular components and dramatically improves stability under tough, oxidizing conditions.

    Turning Wood Scraps into Tape

    A new chemical process converts a component of wasted wood pulp and other biomass into high-value pressure-sensitive adhesives.

    Very Heavy Elements Deliver More Electrons

    Scientists revise understanding of the limits of bonding for very electron-rich heavy elements.

    Probing Water's "No-Man's Land" Temperature Region

    Measuring the physical properties of water at previously unexplored temperatures offers insights into one of the world's essential liquids.

    Novel Soil Bacteria with Unusual Genes Synthesize Unique Antibiotic Precursors

    A large-scale soil project uncovered genetic information from bacteria with the capacity to make specialized molecules that could lead to new pharmaceuticals.

    Warmer Temperatures Lengthen Growing Season, Increase Plants' Vulnerability to Frost

    Experimental warming treatments show how peatland forests may respond to future environmental change.

    Rising Stars Seek to Learn from the Master: Mother Nature

    A trio of scientists was recognized for their early career successes in uncovering how microbes produce fuel, insights that could change our energy portfolio


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