Doe Science news source
The DOE Science News Source is a Newswise initiative to promote research news from the Office of Science of the DOE to the public and news media.
  • 2017-08-24 13:05:11
  • Article ID: 680037

Big Bang - The Movie

  • Credit: Lindsey Bleem, Nan Li, and the HACC team/Argonne National Laboratory; Mike Gladders/University of Chicago

    A simulated sky image of galaxies produced by running Argonne-developed high-performance computing codes and then running a galaxy formation model. Argonne has collaborated with the University of Illinois, teaming up two supercomputers to perform simulation and data analysis of extremely large-scale, computationally intensive models of the universe.

  • Credit: Joe Insley and Silvio Rizzi/Argonne National Laboratory.

    Dark matter halo distribution from the Outer Rim simulation carried out on 32 racks of Mira with the Hardware/Hybrid Accelerated Cosmology Code (HACC). Shown is the full simulation volume with halos above a certain mass cut. The halos are colored by mass, the heavier halos are shown in red. These halos host the galaxies that we observe with large telescopes.

If you have ever had to wait those agonizing minutes in front of a computer for a movie or large file to load, you’ll likely sympathize with the plight of cosmologists at the U.S. Department of Energy’s (DOE) Argonne National Laboratory. But instead of watching TV dramas, they are trying to transfer, as fast and as accurately as possible, the huge amounts of data that make up movies of the universe – computationally demanding and highly intricate simulations of how our cosmos evolved after the Big Bang.

In a new approach to enable scientific breakthroughs, researchers linked together supercomputers at the Argonne Leadership Computing Facility (ALCF) and at the National Center for Supercomputing Applications (NCSA) at the University of Illinois at Urbana-Champaign (UI). This link enabled scientists to transfer massive amounts of data and to run two different types of demanding computations in a coordinated fashion – referred to technically as a workflow.

“We talk about building the ‘universe in the lab,’ and simulations are a huge component of that.” - Katrin Heitmann, Argonne cosmologist

What distinguishes the new work from typical workflows is the scale of the computation, the associated data generation and transfer and the scale and complexity of the final analysis. Researchers also tapped the unique capabilities of each supercomputer: They performed cosmological simulations on the ALCF’s Mira supercomputer, and then sent huge quantities of data to UI’s Blue Waters, which is better suited to perform the required data analysis tasks because of its processing power and memory balance.

For cosmology, observations of the sky and computational simulations go hand in hand, as each informs the other. Cosmological surveys are becoming ever more complex as telescopes reach deeper into space and time, mapping out the distributions of galaxies at farther and farther distances, at earlier epochs of the evolution of the universe.

The very nature of cosmology precludes carrying out controlled lab experiments, so scientists rely instead on simulations to provide a unique way to create a virtual cosmological laboratory. “The simulations that we run are a backbone for the different kinds of science that can be done experimentally, such as the large-scale experiments at different telescope facilities around the world,” said Argonne cosmologist Katrin Heitmann. “We talk about building the ‘universe in the lab,’ and simulations are a huge component of that.”

Not just any computer is up to the immense challenge of generating and dealing with datasets that can exceed many petabytes a day, according to Heitmann. “You really need high-performance supercomputers that are capable of not only capturing the dynamics of trillions of different particles, but also doing exhaustive analysis on the simulated data,” she said. “And sometimes, it’s advantageous to run the simulation and do the analysis on different machines.”

Typically, cosmological simulations can only output a fraction of the frames of the computational movie as it is running because of data storage restrictions. In this case, Argonne sent every data frame to NCSA as soon it was generated, allowing Heitmann and her team to greatly reduce the storage demands on the ALCF file system. “You want to keep as much data around as possible,” Heitmann said. “In order to do that, you need a whole computational ecosystem to come together: the fast data transfer, having a good place to ultimately store that data and being able to automate the whole process.”

In particular, Argonne transferred the data produced immediately to Blue Waters for analysis. The first challenge was to set up the transfer to sustain the bandwidth of one petabyte per day.

Once Blue Waters performed the first pass of data analysis, it reduced the raw data – with high fidelity – into a manageable size. At that point, researchers sent the data to a distributed repository at Argonne, the Oak Ridge Leadership Computing Facility at Oak Ridge National Laboratory and the National Energy Research Scientific Computing Center (NERSC) at Lawrence Berkeley National Laboratory. Cosmologists can access and further analyze the data through a system built by researchers in Argonne’s Mathematics and Computer Science Division in collaboration with Argonne’s High Energy Physics Division.

Argonne and University of Illinois built one such central repository on the Supercomputing ’16 conference exhibition floor in November 2016, with memory units supplied by DDN Storage. The data moved over 1,400 miles to the conference’s SciNet network. The link between the computers used high-speed networking through the Department of Energy’s Energy Science Network (ESnet). Researchers sought, in part, to take full advantage of the fast SciNET infrastructure to do real science; typically it is used for demonstrations of technology rather than solving real scientific problems.

“External data movement at high speeds significantly impacts a supercomputer’s performance,” said Brandon George, systems engineer at DDN Storage. “Our solution addresses that issue by building a self-contained data transfer node with its own high-performance storage that takes in a supercomputer’s results and the responsibility for subsequent data transfers of said results, leaving supercomputer resources free to do their work more efficiently.”

The full experiment ran successfully for 24 hours without interruption and led to a valuable new cosmological data set that Heitmann and other researchers started to analyze on the SC16 show floor.

Argonne senior computer scientist Franck Cappello, who led the effort, likened the software workflow that the team developed to accomplish these goals to an orchestra. In this “orchestra,” Cappello said, the software connects individual sections, or computational resources, to make a richer, more complex sound.

He added that his collaborators hope to improve the performance of the software to make the production and analysis of extreme-scale scientific data more accessible. “The SWIFT workflow environment and the Globus file transfer service were critical technologies to provide the effective and reliable orchestration and the communication performance that were required by the experiment,” Cappello said.

“The idea is to have data centers like we have for the commercial cloud. They will hold scientific data and will allow many more people to access and analyze this data, and develop a better understanding of what they’re investigating,” said Cappello, who also holds an affiliate position at NCSA and serves as director of the international Joint Laboratory on Extreme Scale Computing, based in Illinois. “In this case, the focus was cosmology and the universe. But this approach can aid scientists in other fields in reaching their data just as well.”

Argonne computer scientist Rajkumar Kettimuthu and David Wheeler, lead network engineer at NCSA, were instrumental in establishing the configuration that actually reached this performance. Maxine Brown from University of Illinois provided the Sage environment to display the analysis result at extreme resolution. Justin Wozniak from Argonne developed the whole workflow environment using SWIFT to orchestrate and perform all operations.

The Argonne Leadership Computing Facility, the Oak Ridge Leadership Computing Facility, the Energy Science Network and the National Energy Research Scientific Computing Center are DOE Office of Science User Facilities. Blue Waters is the largest leadership-class supercomputer funded by the National Science Foundation. Part of this work was funded by DOE’s Office of Science.

The National Center for Supercomputing Applications (NCSA) at the University of Illinois at Urbana-Champaign provides supercomputing and advanced digital resources for the nation’s science enterprise. At NCSA, University of Illinois faculty, staff, students, and collaborators from around the globe use advanced digital resources to address research grand challenges for the benefit of science and society. NCSA has been advancing one third of the Fortune 50 for more than 30 years by bringing industry, researchers, and students together to solve grand challenges at rapid speed and scale.

The National Science Foundation (NSF) is an independent federal agency that supports fundamental research and education across all fields of science and engineering. In fiscal year (FY) 2016, its budget is $7.5 billion. NSF funds reach all 50 states through grants to nearly 2,000 colleges, universities and other institutions. Each year, NSF receives more than 48,000 competitive proposals for funding and makes about 12,000 new funding awards. NSF also awards about $626 million in professional and service contracts yearly.

Argonne National Laboratory seeks solutions to pressing national problems in science and technology. The nation's first national laboratory, Argonne conducts leading-edge basic and applied scientific research in virtually every scientific discipline. Argonne researchers work closely with researchers from hundreds of companies, universities, and federal, state and municipal agencies to help them solve their specific problems, advance America's scientific leadership and prepare the nation for a better future. With employees from more than 60 nations, Argonne is managed by UChicago Argonne, LLC for the U.S. Department of Energy's Office of Science.

The U.S. Department of Energy's Office of Science is the single largest supporter of basic research in the physical sciences in the United States and is working to address some of the most pressing challenges of our time. For more information, visit the Office of Science website.

X
X
X
  • Filters

  • × Clear Filters

How the Earth Stops High-Energy Neutrinos in Their Tracks

A research collaboration including scientists from Berkeley Lab has demonstrated that the Earth stops high-energy neutrinos - particles that only very rarely interact with matter.

Kentucky Researchers First to Produce High Grade Rare Earths From Coal

University of Kentucky researchers have produced nearly pure rare earth concentrates from Kentucky coal using an environmentally-conscious and cost-effective process, a groundbreaking accomplishment in the energy industry.

Watching Atoms Move in Hybrid Perovskite Crystals Reveals Clues to Improving Solar Cells

The discovery of nanoscale changes deep inside hybrid perovskites could shed light on developing low-cost, high-efficiency solar cells. Using X-ray beams and lasers, a team of researchers led by the University of California San Diego discovered how the movement of ions in hybrid perovskites causes certain regions within the material to become better solar cells than other parts.

Quantum Dots Amplify Light with Electrical Pumping

In a breakthrough development, Los Alamos scientists have shown that they can successfully amplify light using electrically excited films of the chemically synthesized semiconductor nanocrystals known as quantum dots.

The Challenge of Estimating Alaska's Soil Carbon Stocks

A geospatial analysis determined the optimal distribution of sites needed to reliably estimate Alaska's vast soil carbon.

Strain-Free Epitaxy of Germanium Film on Mica

Germanium was the material of choice in the early history of electronic devices, and due to its high charge carrier mobility, it's making a comeback. It's generally grown on expensive single-crystal substrates, adding another challenge to making it sustainably viable for most applications. To address this aspect, researchers demonstrate an epitaxy method that incorporates van der Waals' forces to grow germanium on mica. They discuss their work in the Journal of Applied Physics.

Unplugging the Cellulose Biofuel Bottleneck

Molecular-level understanding of cellulose structure reveals why it resists degradation and could lead to cost-effective biofuels.

Detailed View of Immune Proteins Could Lead to New Pathogen-Defense Strategies

Biologists at Berkeley Lab and UC Berkeley used cryo-EM to resolve the structure of a ring of proteins used by the immune system to summon support when under attack, providing new insight into potential strategies for protection from pathogens. The researchers captured the high-resolution image of a protein ring, called an inflammasome, as it was bound to flagellin, a protein from the whiplike tail used by bacteria to propel themselves forward.

Unlocking the Secrets of Ebola

Scientists have identified a set of biomarkers that indicate which patients infected with the Ebola virus are most at risk of dying from the disease. The results come from one of the most in-depth studies ever of blood samples from patients with Ebola.

Scientists Make First Observations of How a Meteor-Like Shock Turns Silica Into Glass

Studies at the Department of Energy's SLAC National Accelerator Laboratory have made the first real-time observations of how silica - an abundant material in the Earth's crust - easily transforms into a dense glass when hit with a massive shock wave like one generated from a meteor impact.


  • Filters

  • × Clear Filters

Five Brookhaven Lab Scientists Named 2017 American Physical Society Fellows

Anatoly Frenkel, Morgan May, Rachid Nouicer, Eric Stach, and Peter Steinberg were recognized for their outstanding contributions to astrophysics, materials physics, and nuclear physics.

Argonne Appoints Chief of Staff

Megan Clifford has been named Chief of Staff at the U.S. Department of Energy's (DOE) Argonne National Laboratory, effective January 1, 2018.

Jefferson Lab Scientist Selected to Receive Francis Slack Award

Dr. Hari Areti, has been selected to receive the Francis G. Slack Award, established by the Southeastern Section of the American Physical Society, to honor excellence in service to Physics in the Southeastern U.S.

ORNL Wins Nine R&D 100 Awards

Researchers at the Department of Energy's Oak Ridge National Laboratory have received nine R&D 100 Awards in recognition of their significant advancements in science and technology.

Argonne Scientists Capture Several R&D 100 Awards

Innovative technologies developed by researchers at the U.S. Department of Energy's (DOE) Argonne National Laboratory recently earned several R&D 100 Awards.

Eight Los Alamos innovations win R&D 100 Awards

Eight Los Alamos National Laboratory technologies won R&D 100 Awards last week at R&D Magazine's annual ceremony in Orlando, Florida.

Physicist David Gates Named Editor-in-Chief of Plasma, a New Online Journal

Article announces David Gates' appointment as editor-in-chief of Plasma magazine

Argonne to Install Comanche System to Explore ARM Technology for High-Performance Computing

Argonne National Laboratory is collaborating with Hewlett Packard Enterprise (HPE) to provide system software expertise and a development ecosystem for a future high-performance computing (HPC) system based on 64-bit ARM processors.

CANDLE Shines in 2017 HPCwire Readers' and Editors' Choice Awards

Argonne National Laboratory has been recognized in the annual <em>HPCwire</em> Readers' and Editors' Choice Awards, presented at the 2017 International Conference for High Performance Computing, Networking, Storage and Analysis (SC17), in Denver, Colorado.

SLAC's Helen Quinn Honored with 2018 Benjamin Franklin Medal in Physics

Helen Quinn, a professor emerita at the Department of Energy's SLAC National Accelerator Laboratory and Stanford University, will receive the 2018 Benjamin Franklin Medal in Physics - one of eight prestigious Franklin Institute Awards that will be handed out in Philadelphia next April.


  • Filters

  • × Clear Filters

The Challenge of Estimating Alaska's Soil Carbon Stocks

A geospatial analysis determined the optimal distribution of sites needed to reliably estimate Alaska's vast soil carbon.

Unplugging the Cellulose Biofuel Bottleneck

Molecular-level understanding of cellulose structure reveals why it resists degradation and could lead to cost-effective biofuels.

How Fungal Enzymes Break Down Plant Cell Walls

Lignocellulose-degrading enzyme complexes could improve biofuel production.

Stretching to Perfection of 2-D Semiconductors

Scientists use heat and mismatched surfaces to stretch films that can potentially improve the efficient operation of devices.

Simple is Beautiful in Quantum Computing

Defect spins in diamond were controlled with a simpler, geometric method, leading to faster computing.

The Effect of Hurricanes on Puerto Rico's Dry Forests

More frequent storms turn forests from carbon source to sink.

A Chemical Thermometer for Tropical Forests

Monoterpene measures how certain forests respond to heat stress.

Where a Leaf Lands and Lies Influences Carbon Levels in Soil for Years to Come

Whether carbon comes from leaves or needles affects how fast it decomposes, but where it ends up determines how long it's available.

Twisting Molecule Wrings More Power from Solar Cells

Readily rotating molecules let electrons last, resulting in higher solar cell efficiency.

Rules Are Only Suggestions in Heavy Elements

The arrangement of electrons in an exotic human-made element shows that certain properties of heavy elements cannot be predicted using lighter ones.


Spotlight

Tuesday October 03, 2017, 01:05 PM

Stairway to Science

Argonne National Laboratory

Thursday September 28, 2017, 12:05 PM

After-School Energy Rush

Argonne National Laboratory

Thursday September 28, 2017, 10:05 AM

Bringing Diversity Into Computational Science Through Student Outreach

Brookhaven National Laboratory

Thursday September 21, 2017, 03:05 PM

From Science to Finance: SLAC Summer Interns Forge New Paths in STEM

SLAC National Accelerator Laboratory

Thursday September 07, 2017, 02:05 PM

Students Discuss 'Cosmic Opportunities' at 45th Annual SLAC Summer Institute

SLAC National Accelerator Laboratory

Thursday August 31, 2017, 05:05 PM

Binghamton University Opens $70 Million Smart Energy Building

Binghamton University, State University of New York

Wednesday August 23, 2017, 05:05 PM

Widening Horizons for High Schoolers with Code

Argonne National Laboratory

Saturday May 20, 2017, 12:05 PM

Rensselaer Polytechnic Institute Graduates Urged to Embrace Change at 211th Commencement

Rensselaer Polytechnic Institute (RPI)

Monday May 15, 2017, 01:05 PM

ORNL, University of Tennessee Launch New Doctoral Program in Data Science

Oak Ridge National Laboratory

Friday April 07, 2017, 11:05 AM

Champions in Science: Profile of Jonathan Kirzner

Department of Energy, Office of Science

Wednesday April 05, 2017, 12:05 PM

High-Schooler Solves College-Level Security Puzzle From Argonne, Sparks Interest in Career

Argonne National Laboratory

Tuesday March 28, 2017, 12:05 PM

Champions in Science: Profile of Jenica Jacobi

Department of Energy, Office of Science

Friday March 24, 2017, 10:40 AM

Great Neck South High School Wins Regional Science Bowl at Brookhaven Lab

Brookhaven National Laboratory

Wednesday February 15, 2017, 04:05 PM

Middle Schoolers Test Their Knowledge at Science Bowl Competition

Argonne National Laboratory

Friday January 27, 2017, 04:00 PM

Haslam Visits ORNL to Highlight State's Role in Discovering Tennessine

Oak Ridge National Laboratory

Tuesday November 08, 2016, 12:05 PM

Internship Program Helps Foster Development of Future Nuclear Scientists

Oak Ridge National Laboratory

Friday May 13, 2016, 04:05 PM

More Than 12,000 Explore Jefferson Lab During April 30 Open House

Thomas Jefferson National Accelerator Facility

Monday April 25, 2016, 05:05 PM

Giving Back to National Science Bowl

Ames Laboratory

Friday March 25, 2016, 12:05 PM

NMSU Undergrad Tackles 3D Particle Scattering Animations After Receiving JSA Research Assistantship

Thomas Jefferson National Accelerator Facility

Tuesday February 02, 2016, 10:05 AM

Shannon Greco: A Self-Described "STEM Education Zealot"

Princeton Plasma Physics Laboratory

Monday November 16, 2015, 04:05 PM

Rare Earths for Life: An 85th Birthday Visit with Mr. Rare Earth

Ames Laboratory

Tuesday October 20, 2015, 01:05 PM

Meet Robert Palomino: 'Give Everything a Shot!'

Brookhaven National Laboratory

Tuesday April 22, 2014, 11:30 AM

University of Utah Makes Solar Accessible

University of Utah

Wednesday March 06, 2013, 03:40 PM

Student Innovator at Rensselaer Polytechnic Institute Seeks Brighter, Smarter, and More Efficient LEDs

Rensselaer Polytechnic Institute (RPI)

Friday November 16, 2012, 10:00 AM

Texas Tech Energy Commerce Students, Community Light up Tent City

Texas Tech University

Wednesday November 23, 2011, 10:45 AM

Don't Get 'Frosted' Over Heating Your Home This Winter

Temple University

Wednesday July 06, 2011, 06:00 PM

New Research Center To Tackle Critical Challenges Related to Aircraft Design, Wind Energy, Smart Buildings

Rensselaer Polytechnic Institute (RPI)

Friday April 22, 2011, 09:00 AM

First Polymer Solar-Thermal Device Heats Home, Saves Money

Wake Forest University

Friday April 15, 2011, 12:25 PM

Like Superman, American University Will Get Its Energy from the Sun

American University

Thursday February 10, 2011, 05:00 PM

ARRA Grant to Help Fund Seminary Building Green Roof

University of Chicago

Tuesday December 07, 2010, 05:00 PM

UC San Diego Installing 2.8 Megawatt Fuel Cell to Anchor Energy Innovation Park

University of California San Diego

Monday November 01, 2010, 12:50 PM

Rensselaer Smart Lighting Engineering Research Center Announces First Deployment of New Technology on Campus

Rensselaer Polytechnic Institute (RPI)

Friday September 10, 2010, 12:40 PM

Ithaca College Will Host Regional Clean Energy Summit

Ithaca College

Tuesday July 27, 2010, 10:30 AM

Texas Governor Announces $8.4 Million Award to Create Renewable Energy Institute

Texas Tech University

Friday May 07, 2010, 04:20 PM

Creighton University to Offer New Alternative Energy Program

Creighton University

Wednesday May 05, 2010, 09:30 AM

National Engineering Program Seeks Subject Matter Experts in Energy

JETS Junior Engineering Technical Society

Wednesday April 21, 2010, 12:30 PM

Students Using Solar Power To Create Sustainable Solutions for Haiti, Peru

Rensselaer Polytechnic Institute (RPI)

Wednesday March 03, 2010, 07:00 PM

Helping Hydrogen: Student Inventor Tackles Challenge of Hydrogen Storage

Rensselaer Polytechnic Institute (RPI)

Thursday February 04, 2010, 02:00 PM

Turning Exercise into Electricity

Furman University

Thursday November 12, 2009, 12:45 PM

Campus Leaders Showing the Way to a Sustainable, Clean Energy Future

National Wildlife Federation (NWF)

Tuesday November 03, 2009, 04:20 PM

Furman University Receives $2.5 Million DOE Grant for Geothermal Project

Furman University

Thursday September 17, 2009, 02:45 PM

Could Sorghum Become a Significant Alternative Fuel Source?

Salisbury University

Wednesday September 16, 2009, 11:15 AM

Students Navigating the Hudson River With Hydrogen Fuel Cells

Rensselaer Polytechnic Institute (RPI)

Wednesday September 16, 2009, 10:00 AM

College Presidents Flock to D.C., Urge Senate to Pass Clean Energy Bill

National Wildlife Federation (NWF)

Wednesday July 01, 2009, 04:15 PM

Northeastern Announces New Professional Master's in Energy Systems

Northeastern University

Friday October 12, 2007, 09:35 AM

Kansas Rural Schools To Receive Wind Turbines

Kansas State University

Thursday August 17, 2006, 05:30 PM

High Gas Prices Here to Stay, Says Engineering Professor

Rowan University





Showing results

0-4 Of 2215